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1. NCBI上的Finding Promoter (NCBI推荐的)

(http://www.ncbi.nlm.nih.gov/Class/NAWBIS/Modules/DNA/dna21b.html)

Promoter Scan from the Bioinformatics and Molecular Analysis section of NIH.

TFSearch from the Computational Biology Research Center of Japan.

DRAGON Gene Start Finder from the DRAGON Genome Explorer site.

2. Promoter 2.0 Prediction Server (http://www.cbs.dtu.dk/services/Promoter/)

Promoter2.0 predicts transcription start sites of vertebrate PolII promoters in DNA sequences. It has been developed as an evolution of simulated transcription factors that interact with sequences in promoter regions. It builds on principles that are common to neural networks and genetic algorithms.

3. TFSEARCH (http://www.cbrc.jp/research/db/TFSEARCH.html)

Searching Transcription Factor Binding Sites (ver 1.3)

4. Neural Network Promoter Prediction (伯克利大学)

(http://fruitfly.org:9005/seq_tools/promoter.html)

5. The Markov Chain Promoter Prediction Server(杜克大学)

(http://tools.genome.duke.edu/gen ... ter/McPromoter.html)

6. Neural Network Promoter Prediction (BIosino:中国生物信息 )

(http://promotor.biosino.org/)

7. Core-Promoter Prediction Program (by Michael Zhang)

(http://rulai.cshl.org/tools/genefinder/CPROMOTER/human.htm)